Variant report

Variant	rs9470264
Chromosome Location	chr6:36344980-36344981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36344496..36346908-chr6:36354591..36356413,2	K562	blood:
2	chr6:36344497..36346225-chr6:36349695..36351527,2	K562	blood:

Variant related genes	Relation type
ENSG00000010030	Chromatin interaction
ENSG00000224666	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1885206	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2234065	0.87[EUR][1000 genomes]
rs2267930	0.81[AMR][1000 genomes]
rs2273882	0.81[AMR][1000 genomes]
rs3778028	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4236051	0.81[AMR][1000 genomes]
rs4711451	0.84[AMR][1000 genomes]
rs4713976	0.84[AMR][1000 genomes]
rs4713977	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2762586	chr6:36344863-36348326	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36326800-36354000	Weak transcription	Small Intestine	intestine
2	chr6:36327000-36354000	Weak transcription	Right Atrium	heart
3	chr6:36328400-36345600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:36328400-36351200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:36328400-36353400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:36328800-36353600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:36333200-36353800	Weak transcription	Pancreas	Pancrea
8	chr6:36333800-36353600	Weak transcription	Stomach Mucosa	stomach
9	chr6:36334400-36345600	Strong transcription	Fetal Intestine Small	intestine
10	chr6:36334600-36351000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:36337000-36345400	Weak transcription	Aorta	Aorta
12	chr6:36337200-36348600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:36339200-36354200	Weak transcription	Esophagus	oesophagus
14	chr6:36339800-36353600	Weak transcription	Lung	lung
15	chr6:36341600-36350800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:36341800-36350800	Weak transcription	Spleen	Spleen
17	chr6:36342000-36346400	Weak transcription	Fetal Thymus	thymus
18	chr6:36343600-36345600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:36343600-36345600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:36344200-36345400	Weak transcription	GM12878-XiMat	blood
21	chr6:36344200-36354000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:36344600-36345200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr6:36344600-36345600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr6:36344600-36347200	Enhancers	Liver	Liver
25	chr6:36344800-36345000	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr6:36344800-36345200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell

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