Variant report

Variant	rs9470380
Chromosome Location	chr6:36681116-36681117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:36677999-36682248	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36560978..36562524-chr6:36680718..36682396,2	K562	blood:
2	chr6:36648865..36650746-chr6:36679299..36682231,2	K562	blood:
3	chr6:36645391..36647920-chr6:36680659..36684331,3	MCF-7	breast:
4	chr6:36680840..36682367-chr6:36685860..36687656,2	K562	blood:
5	chr6:36560048..36562524-chr6:36680718..36683853,3	K562	blood:
6	chr6:36644040..36648031-chr6:36680924..36685784,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6457944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6457945	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9357223	0.81[AFR][1000 genomes]
rs9470375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470376	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470378	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
2	chr6:36669800-36681400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:36670000-36682200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:36671400-36682000	Weak transcription	Spleen	Spleen
5	chr6:36671800-36694000	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:36672200-36681400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:36672200-36693600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:36675800-36682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:36677000-36694000	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr6:36680000-36684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:36680200-36682600	Weak transcription	Esophagus	oesophagus
12	chr6:36680800-36682400	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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