Variant report

Variant	rs9470391
Chromosome Location	chr6:36745427-36745428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36560838..36563428-chr6:36745016..36747444,2	K562	blood:
2	chr6:36744372..36745955-chr6:36748251..36750700,2	MCF-7	breast:
3	chr6:36737147..36740325-chr6:36742690..36745905,3	MCF-7	breast:
4	chr6:36743512..36745490-chr6:36745545..36747211,2	K562	blood:
5	chr6:36744515..36747329-chr6:36748671..36750646,2	K562	blood:
6	chr6:36744831..36747050-chr6:36751447..36753200,2	MCF-7	breast:
7	chr6:36739374..36742354-chr6:36743945..36746524,2	K562	blood:
8	chr6:36743902..36746128-chr6:36952874..36955071,2	MCF-7	breast:
9	chr6:36731859..36733721-chr6:36744461..36746494,2	MCF-7	breast:
10	chr6:36743912..36745696-chr6:36885274..36887622,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1811118	0.83[EUR][1000 genomes]
rs236443	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9470391	TCP11	cis	parietal	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36738000-36746000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:36738200-36751400	Weak transcription	Fetal Heart	heart
4	chr6:36738400-36752200	Weak transcription	Right Atrium	heart
5	chr6:36738600-36746000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:36738600-36746800	Weak transcription	Right Ventricle	heart
7	chr6:36740400-36745600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:36740400-36751200	Enhancers	Dnd41	blood
9	chr6:36740600-36746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:36740600-36748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:36744400-36747200	Enhancers	Brain Anterior Caudate	brain
12	chr6:36744600-36745600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:36744600-36746600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:36744600-36747200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr6:36744800-36745600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:36744800-36745800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:36744800-36746000	Enhancers	Fetal Brain Male	brain
18	chr6:36744800-36746400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:36744800-36746600	Enhancers	Fetal Muscle Leg	muscle
20	chr6:36744800-36746600	Bivalent Enhancer	Fetal Stomach	stomach
21	chr6:36744800-36746800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:36744800-36746800	Enhancers	Brain Germinal Matrix	brain
23	chr6:36745000-36745800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr6:36745000-36745800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr6:36745000-36746600	Enhancers	Brain Angular Gyrus	brain
26	chr6:36745200-36745600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr6:36745200-36745600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr6:36745200-36745600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr6:36745200-36745800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:36745200-36745800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:36745200-36745800	Enhancers	Primary B cells from cord blood	blood
32	chr6:36745200-36745800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:36745200-36745800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:36745200-36745800	Weak transcription	Spleen	Spleen
35	chr6:36745200-36746000	Enhancers	Fetal Lung	lung
36	chr6:36745200-36746200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:36745200-36746400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr6:36745200-36746400	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr6:36745200-36746600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:36745200-36747000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
41	chr6:36745200-36748000	Weak transcription	Fetal Intestine Small	intestine
42	chr6:36745400-36745600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr6:36745400-36746000	Enhancers	Fetal Brain Female	brain
44	chr6:36745400-36746200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr6:36745400-36748200	Weak transcription	Fetal Thymus	thymus
46	chr6:36745400-36748600	Enhancers	Primary neutrophils fromperipheralblood	blood

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