Variant report

Variant	rs9470413
Chromosome Location	chr6:36796614-36796615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36795450..36797184-chr6:36798475..36800268,2	MCF-7	breast:
2	chr6:36794334..36796730-chr6:36804291..36808430,4	K562	blood:
3	chr6:36735205..36738039-chr6:36795328..36797807,2	K562	blood:
4	chr6:36794960..36797017-chr6:36818260..36820420,2	MCF-7	breast:
5	chr6:36795234..36797828-chr6:36799282..36801814,2	MCF-7	breast:
6	chr6:36789119..36791202-chr6:36794316..36796954,2	MCF-7	breast:
7	chr6:36794979..36796750-chr6:36806807..36808819,2	K562	blood:

Variant related genes	Relation type
ENSG00000124772	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs236375	1.00[JPT][hapmap]
rs764603	0.85[AMR][1000 genomes]
rs7767776	0.93[ASN][1000 genomes]
rs9462229	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9470412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9470413	NQO1	trans	brain	seeQTL

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36777000-36797800	Weak transcription	Pancreas	Pancrea
2	chr6:36779400-36797600	Weak transcription	Fetal Brain Female	brain
3	chr6:36788400-36802400	Weak transcription	Fetal Kidney	kidney
4	chr6:36788800-36797200	Enhancers	Right Atrium	heart
5	chr6:36789800-36802200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:36790600-36799400	Enhancers	Fetal Muscle Leg	muscle
7	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:36791400-36798000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:36791600-36797000	Enhancers	Right Ventricle	heart
10	chr6:36794000-36797200	Weak transcription	Fetal Intestine Small	intestine
11	chr6:36794200-36796800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:36794400-36796800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:36794800-36797200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:36794800-36797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:36794800-36797600	Enhancers	HepG2	liver
16	chr6:36795000-36796800	Enhancers	Fetal Thymus	thymus
17	chr6:36795000-36797800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:36795200-36797600	Weak transcription	Stomach Mucosa	stomach
19	chr6:36795200-36797800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:36795200-36798600	Enhancers	HUVEC	blood vessel
21	chr6:36795200-36802600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:36795400-36797600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:36795400-36797800	Weak transcription	Brain Substantia Nigra	brain
24	chr6:36795400-36798800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:36795600-36797000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:36795600-36797600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:36795600-36797800	Weak transcription	Esophagus	oesophagus
28	chr6:36795600-36797800	Weak transcription	Lung	lung
29	chr6:36795600-36797800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:36795600-36798000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:36795800-36797600	Weak transcription	Brain Angular Gyrus	brain
32	chr6:36795800-36797800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:36795800-36797800	Weak transcription	HSMM	muscle
34	chr6:36795800-36797800	Weak transcription	NHEK	skin
35	chr6:36795800-36801800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:36795800-36802200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:36796000-36797000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:36796000-36797400	Weak transcription	Fetal Brain Male	brain
39	chr6:36796000-36797600	Weak transcription	Brain Germinal Matrix	brain
40	chr6:36796000-36797600	Weak transcription	Fetal Stomach	stomach
41	chr6:36796000-36797800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr6:36796000-36797800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:36796000-36797800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:36796000-36797800	Weak transcription	Ovary	ovary
45	chr6:36796000-36797800	Weak transcription	Spleen	Spleen
46	chr6:36796000-36797800	Weak transcription	HMEC	breast
47	chr6:36796000-36797800	Weak transcription	Osteobl	bone
48	chr6:36796000-36798000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:36796200-36797600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:36796200-36797600	Weak transcription	Fetal Lung	lung

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