Variant report

Variant	rs9470701
Chromosome Location	chr6:37755911-37755912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37741856..37743598-chr6:37754566..37756274,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4714105	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9470702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37752600-37756000	Weak transcription	HSMM	muscle
2	chr6:37752600-37758000	Weak transcription	Liver	Liver
3	chr6:37752600-37758600	Weak transcription	Fetal Brain Female	brain
4	chr6:37752600-37758800	Weak transcription	HSMMtube	muscle
5	chr6:37752800-37756000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:37753000-37758400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:37753200-37758000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:37753200-37758200	Weak transcription	Ovary	ovary
9	chr6:37753200-37758800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:37753200-37759000	Weak transcription	Right Atrium	heart
11	chr6:37753400-37758200	Weak transcription	Pancreas	Pancrea
12	chr6:37753400-37758800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:37753400-37758800	Weak transcription	Esophagus	oesophagus
14	chr6:37753600-37758000	Weak transcription	Fetal Brain Male	brain
15	chr6:37753800-37756000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:37753800-37758800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:37753800-37758800	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:37754000-37758600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:37754000-37758800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:37755000-37756000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:37755000-37758800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:37755200-37756000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:37755200-37759000	Weak transcription	Fetal Intestine Large	intestine
24	chr6:37755400-37756400	Enhancers	Placenta	Placenta
25	chr6:37755400-37756400	Enhancers	NHDF-Ad	bronchial
26	chr6:37755400-37759000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:37755600-37756200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:37755600-37756600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:37755600-37756600	Enhancers	HMEC	breast
30	chr6:37755600-37756600	Enhancers	NHEK	skin
31	chr6:37755600-37756800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:37755800-37756400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:37755800-37756400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr6:37755800-37756400	Enhancers	A549	lung
35	chr6:37755800-37756400	Enhancers	NHLF	lung
36	chr6:37755800-37756600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:37755800-37756800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:37755800-37758400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:37755800-37758600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:37755800-37758600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links