Variant report

Variant	rs9470896
Chromosome Location	chr6:38509266-38509267
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13196595	1.00[AMR][1000 genomes]
rs13199048	0.81[EUR][1000 genomes]
rs2748153	0.95[EUR][1000 genomes]
rs2748154	0.95[EUR][1000 genomes]
rs2748155	0.95[EUR][1000 genomes]
rs2748158	0.95[EUR][1000 genomes]
rs2814886	0.95[EUR][1000 genomes]
rs7452084	0.87[EUR][1000 genomes]
rs7773783	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38479000-38509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:38487000-38518600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:38494400-38513800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:38494400-38515400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:38494400-38518800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:38494400-38524200	Weak transcription	Aorta	Aorta
7	chr6:38494800-38522600	Weak transcription	Ovary	ovary
8	chr6:38495000-38521800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:38496200-38517600	Weak transcription	Esophagus	oesophagus
10	chr6:38496600-38539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:38496800-38521600	Weak transcription	Lung	lung
12	chr6:38497000-38517600	Weak transcription	Small Intestine	intestine
13	chr6:38497000-38538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:38497000-38539400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:38498400-38518400	Weak transcription	Primary B cells from cord blood	blood
16	chr6:38500600-38514800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:38500600-38517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:38500600-38517600	Weak transcription	Right Ventricle	heart
19	chr6:38500600-38518600	Weak transcription	Left Ventricle	heart
20	chr6:38500800-38520800	Weak transcription	Fetal Intestine Small	intestine
21	chr6:38501400-38518600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:38506800-38517000	Weak transcription	Brain Anterior Caudate	brain
23	chr6:38508200-38522200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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