Variant report

Variant	rs9471016
Chromosome Location	chr6:39196392-39196393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39170012..39173010-chr6:39194285..39196889,3	MCF-7	breast:
2	chr6:39195950..39197614-chr6:39288788..39290950,2	K562	blood:
3	chr6:39081916..39085282-chr6:39194692..39197671,3	K562	blood:
4	chr6:39081916..39083618-chr6:39195475..39198026,2	K562	blood:
5	chr6:39194146..39197134-chr6:39221848..39224587,2	K562	blood:
6	chr6:39194953..39196522-chr6:39199529..39201264,2	MCF-7	breast:
7	chr6:39152234..39153949-chr6:39194899..39197101,2	K562	blood:

Variant related genes	Relation type
ENSG00000112167	Chromatin interaction
ENSG00000095981	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2561402	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462495	0.91[ASN][1000 genomes]
rs9471013	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39193200-39196600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr6:39193800-39196600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
3	chr6:39193800-39197800	Flanking Active TSS	Fetal Thymus	thymus
4	chr6:39194200-39197000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
5	chr6:39194800-39197600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:39195200-39196600	Active TSS	Gastric	stomach
7	chr6:39195200-39196800	Flanking Active TSS	Hela-S3	cervix
8	chr6:39195200-39197000	Flanking Active TSS	Pancreas	Pancrea
9	chr6:39195200-39197600	Bivalent/Poised TSS	Stomach Mucosa	stomach
10	chr6:39195200-39197800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr6:39195200-39197800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:39195200-39197800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:39195400-39196600	Bivalent Enhancer	Primary B cells from cord blood	blood
14	chr6:39195400-39197000	Bivalent/Poised TSS	Small Intestine	intestine
15	chr6:39195600-39196400	Active TSS	Fetal Lung	lung
16	chr6:39195600-39196400	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr6:39195600-39196800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:39195600-39196800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
19	chr6:39195600-39197200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
20	chr6:39195800-39196400	Active TSS	Duodenum Mucosa	Duodenum
21	chr6:39195800-39196400	Bivalent/Poised TSS	Fetal Kidney	kidney
22	chr6:39195800-39196400	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr6:39195800-39196600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
24	chr6:39195800-39197200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
25	chr6:39195800-39197200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr6:39195800-39197400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:39195800-39197400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:39195800-39197600	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr6:39195800-39197600	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr6:39195800-39197600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:39195800-39197600	Active TSS	K562	blood
32	chr6:39195800-39197800	Active TSS	H9 Cell Line	embryonic stem cell
33	chr6:39195800-39197800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
34	chr6:39195800-39197800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr6:39196000-39196400	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr6:39196000-39196400	Active TSS	Esophagus	oesophagus
37	chr6:39196000-39196600	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:39196000-39196600	Active TSS	Liver	Liver
39	chr6:39196000-39196800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
40	chr6:39196000-39196800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
41	chr6:39196000-39196800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
42	chr6:39196000-39197000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
43	chr6:39196000-39197200	Flanking Active TSS	Primary T cells from cord blood	blood
44	chr6:39196000-39197200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
45	chr6:39196000-39197200	Flanking Active TSS	Primary hematopoietic stem cells	blood
46	chr6:39196000-39197200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:39196000-39197200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
48	chr6:39196000-39197200	Flanking Active TSS	Spleen	Spleen
49	chr6:39196000-39197400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:39196000-39197400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland

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