Variant report

Variant	rs9472270
Chromosome Location	chr6:44342593-44342594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9395012	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9472271	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1794353	chr6:44333489-44350716	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44340400-44343000	Enhancers	HMEC	breast
2	chr6:44340400-44343000	Enhancers	NHEK	skin
3	chr6:44341000-44342600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:44341800-44342800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:44341800-44343000	Enhancers	Liver	Liver
6	chr6:44341800-44354600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:44342400-44342800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:44342400-44343200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:44342400-44343200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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