Variant report

Variant	rs9472631
Chromosome Location	chr6:45932883-45932884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45908480..45910653-chr6:45930951..45933315,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55940345	1.00[EUR][1000 genomes]
rs57027127	1.00[EUR][1000 genomes]
rs59916509	1.00[EUR][1000 genomes]
rs60146555	1.00[EUR][1000 genomes]
rs6933663	1.00[EUR][1000 genomes]
rs73448525	1.00[EUR][1000 genomes]
rs73448534	1.00[EUR][1000 genomes]
rs73735482	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45918800-45938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:45920000-45934800	Weak transcription	Colonic Mucosa	Colon
3	chr6:45924600-45934400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:45926800-45935000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:45927800-45933000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:45928000-45933000	Weak transcription	HMEC	breast
7	chr6:45928200-45936400	Weak transcription	Fetal Kidney	kidney
8	chr6:45928400-45934200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:45928600-45933600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:45928600-45934200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:45928600-45934200	Weak transcription	Lung	lung
12	chr6:45928600-45934200	Weak transcription	Right Ventricle	heart
13	chr6:45929600-45933400	Weak transcription	Placenta	Placenta
14	chr6:45930600-45933000	Weak transcription	Fetal Heart	heart
15	chr6:45931400-45934400	Weak transcription	Right Atrium	heart
16	chr6:45932000-45936200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:45932200-45934200	Weak transcription	Small Intestine	intestine
18	chr6:45932400-45934200	Weak transcription	Left Ventricle	heart
19	chr6:45932400-45934400	Weak transcription	Psoas Muscle	Psoas
20	chr6:45932400-45934600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:45932600-45933400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:45932600-45934800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:45932600-45935000	Enhancers	HSMM	muscle
24	chr6:45932600-45937800	Weak transcription	Fetal Intestine Large	intestine
25	chr6:45932800-45934200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:45932800-45934600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:45932800-45934600	Enhancers	NH-A	brain
28	chr6:45932800-45934600	Enhancers	Osteobl	bone
29	chr6:45932800-45934800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:45932800-45935000	Enhancers	HSMMtube	muscle

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