Variant report

Variant	rs9472674
Chromosome Location	chr6:46000619-46000620
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484840	1.00[JPT][hapmap]
rs13328271	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1578005	1.00[JPT][hapmap]
rs2179993	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28588569	1.00[AMR][1000 genomes]
rs3777597	1.00[JPT][hapmap]
rs6906803	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6919720	1.00[JPT][hapmap]
rs6922977	1.00[JPT][hapmap]
rs6927513	1.00[JPT][hapmap]
rs6936849	1.00[JPT][hapmap]
rs7771759	1.00[ASN][1000 genomes]
rs9296477	1.00[JPT][hapmap]
rs9463167	1.00[JPT][hapmap]
rs9463170	1.00[ASN][1000 genomes]
rs9472662	1.00[JPT][hapmap]
rs9472666	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9472667	1.00[JPT][hapmap]
rs9472668	0.91[YRI][hapmap]
rs9472670	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428482	chr6:45926644-46050182	Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1025846	chr6:45955173-46047269	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv970299	chr6:45997282-46003233	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45998800-46012600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:46000000-46001000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:46000000-46001200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:46000200-46000800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:46000200-46001400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:46000200-46001800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:46000600-46001600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:46000600-46002600	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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