Variant report

Variant	rs9473479
Chromosome Location	chr6:48716567-48716568
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1365722	1.00[EUR][1000 genomes]
rs171453	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1938187	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1991357	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1991358	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2226267	1.00[EUR][1000 genomes]
rs243111	1.00[EUR][1000 genomes]
rs243115	1.00[EUR][1000 genomes]
rs243126	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs243131	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs243133	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2996248	1.00[EUR][1000 genomes]
rs4337935	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9473419	1.00[EUR][1000 genomes]
rs9473459	1.00[EUR][1000 genomes]
rs9473467	1.00[EUR][1000 genomes]
rs9473477	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963049	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs963050	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs967599	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752125	chr6:48575963-48718589	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv885879	chr6:48634956-48730669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48715400-48718200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr6:48715400-48723800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:48715600-48717800	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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