Variant report
| Variant | rs9473624 |
|---|---|
| Chromosome Location | chr6:49579390-49579391 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49577263..49579688-chr6:49814962..49817150,2 | K562 | blood: | |
| 2 | chr6:49423228..49426093-chr6:49579151..49581831,2 | K562 | blood: | |
| 3 | chr6:49577238..49581324-chr6:49598610..49601662,4 | K562 | blood: | |
| 4 | chr6:49579192..49582570-chr6:49583454..49586038,3 | K562 | blood: | |
| 5 | chr6:49573293..49574948-chr6:49577612..49579787,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10456626 | 1.00[CEU][hapmap] |
| rs10456627 | 1.00[CEU][hapmap] |
| rs1058066 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12197533 | 1.00[CEU][hapmap] |
| rs12203129 | 1.00[CEU][hapmap] |
| rs12524967 | 0.91[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs2396910 | 1.00[ASN][1000 genomes] |
| rs28681170 | 1.00[ASN][1000 genomes] |
| rs2894761 | 1.00[ASN][1000 genomes] |
| rs4496800 | 1.00[ASN][1000 genomes] |
| rs4496801 | 1.00[ASN][1000 genomes] |
| rs73737203 | 1.00[ASN][1000 genomes] |
| rs73737204 | 1.00[ASN][1000 genomes] |
| rs73737205 | 1.00[ASN][1000 genomes] |
| rs73737206 | 1.00[ASN][1000 genomes] |
| rs73737207 | 0.95[ASN][1000 genomes] |
| rs73737212 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7450788 | 1.00[ASN][1000 genomes] |
| rs9463509 | 1.00[ASN][1000 genomes] |
| rs9463510 | 1.00[ASN][1000 genomes] |
| rs9463514 | 1.00[ASN][1000 genomes] |
| rs9463515 | 1.00[ASN][1000 genomes] |
| rs9463516 | 0.95[ASN][1000 genomes] |
| rs9463517 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9473605 | 1.00[ASN][1000 genomes] |
| rs9473606 | 1.00[ASN][1000 genomes] |
| rs9473607 | 1.00[ASN][1000 genomes] |
| rs9473608 | 1.00[ASN][1000 genomes] |
| rs9473609 | 1.00[ASN][1000 genomes] |
| rs9473610 | 1.00[ASN][1000 genomes] |
| rs9473611 | 1.00[ASN][1000 genomes] |
| rs9473612 | 1.00[ASN][1000 genomes] |
| rs9473613 | 1.00[ASN][1000 genomes] |
| rs9473617 | 1.00[ASN][1000 genomes] |
| rs9473619 | 1.00[ASN][1000 genomes] |
| rs9473620 | 1.00[ASN][1000 genomes] |
| rs9473621 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9473622 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs9473623 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9473626 | 0.82[AFR][1000 genomes] |
| rs9473627 | 0.81[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024959 | chr6:49290141-49652124 | Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1021136 | chr6:49295037-49631278 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 4 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49572600-49586600 | Strong transcription | K562 | blood |
