Variant report

Variant	rs9474026
Chromosome Location	chr6:13364660-13364661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13364126..13366714-chr6:13711205..13713742,2	MCF-7	breast:
2	chr4:62607481..62608026-chr6:13364428..13365302,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs28414695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28495821	0.83[AMR][1000 genomes]
rs57704350	0.83[AMR][1000 genomes]
rs9474025	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1028533	chr6:13239059-13484814	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv538136	chr6:13239059-13484814	Strong transcription Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1034016	chr6:13248122-13418225	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13355600-13383400	Weak transcription	A549	lung
2	chr6:13356200-13364800	Weak transcription	Colonic Mucosa	Colon
3	chr6:13356200-13365000	Weak transcription	Gastric	stomach
4	chr6:13356200-13367600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:13356200-13371800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:13356200-13372000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:13356200-13373600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:13356200-13378200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:13356400-13365000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:13356400-13368000	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:13358000-13364800	Weak transcription	Dnd41	blood
12	chr6:13358000-13371800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:13358200-13367600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:13358200-13368200	Weak transcription	HMEC	breast
15	chr6:13358400-13367600	Weak transcription	NH-A	brain
16	chr6:13358800-13365000	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:13358800-13365800	Strong transcription	Stomach Smooth Muscle	stomach
18	chr6:13358800-13367400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:13359000-13367600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:13359200-13365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:13359200-13367400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:13359200-13367600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:13359200-13367600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:13359200-13367600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:13359400-13364800	Weak transcription	Brain Substantia Nigra	brain
26	chr6:13359400-13367400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:13359400-13367600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:13360600-13365000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:13360800-13364800	Enhancers	Right Atrium	heart
30	chr6:13360800-13370800	Weak transcription	HepG2	liver
31	chr6:13361400-13367400	Weak transcription	HUVEC	blood vessel
32	chr6:13361600-13364800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:13361600-13378200	Weak transcription	Fetal Thymus	thymus
34	chr6:13361800-13364800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:13361800-13364800	Weak transcription	K562	blood
36	chr6:13361800-13367600	Weak transcription	Psoas Muscle	Psoas
37	chr6:13362400-13368600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr6:13362800-13364800	Genic enhancers	Spleen	Spleen
39	chr6:13362800-13365000	Enhancers	Primary B cells from peripheral blood	blood
40	chr6:13362800-13365600	Strong transcription	Fetal Lung	lung
41	chr6:13362800-13365800	Genic enhancers	Left Ventricle	heart
42	chr6:13362800-13366000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:13362800-13366000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:13362800-13366000	Strong transcription	Liver	Liver
45	chr6:13362800-13366600	Strong transcription	GM12878-XiMat	blood
46	chr6:13363000-13365800	Strong transcription	NHEK	skin
47	chr6:13363200-13364800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:13363200-13367600	Weak transcription	Placenta	Placenta
49	chr6:13363400-13365000	Weak transcription	Ovary	ovary
50	chr6:13363400-13368600	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links