Variant report

Variant	rs9474428
Chromosome Location	chr6:13527301-13527302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13523078..13528567-chr6:13572959..13576229,4	MCF-7	breast:
2	chr6:13474713..13477366-chr6:13526684..13528787,2	MCF-7	breast:
3	chr6:13527086..13529116-chr6:13531741..13533503,2	K562	blood:

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17618814	0.89[AMR][1000 genomes]
rs17618984	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17680885	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2841573	0.87[EUR][1000 genomes]
rs73356466	0.94[EUR][1000 genomes]
rs73372830	1.00[AMR][1000 genomes]
rs9463861	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9474387	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1033620	chr6:13419730-13571788	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13521600-13529200	Enhancers	HUVEC	blood vessel
2	chr6:13523000-13530000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:13523400-13527400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:13523800-13527800	Enhancers	Fetal Thymus	thymus
5	chr6:13524000-13527400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:13524000-13528200	Enhancers	Primary B cells from peripheral blood	blood
7	chr6:13524000-13528200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:13524000-13530000	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:13524800-13527600	Weak transcription	Spleen	Spleen
10	chr6:13524800-13529000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:13525000-13529000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:13525200-13528200	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr6:13525200-13529000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:13525200-13532400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:13525200-13534800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:13525600-13528200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:13525600-13528200	Enhancers	Primary B cells from cord blood	blood
18	chr6:13525800-13527600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:13525800-13528200	Enhancers	Adipose Nuclei	Adipose
20	chr6:13526000-13527600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:13526000-13527800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr6:13526000-13530000	Enhancers	Fetal Brain Male	brain
23	chr6:13526200-13527600	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:13526200-13527800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:13526200-13527800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:13526200-13527800	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:13526200-13528000	Enhancers	Placenta	Placenta
28	chr6:13526200-13528200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr6:13526400-13527400	Enhancers	Primary T cells from cord blood	blood
30	chr6:13526400-13527600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr6:13526400-13527600	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr6:13526400-13527600	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr6:13526400-13527600	Enhancers	GM12878-XiMat	blood
34	chr6:13526400-13527600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr6:13526600-13527600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr6:13526600-13527600	Enhancers	Brain Hippocampus Middle	brain
37	chr6:13526600-13527600	Enhancers	Fetal Brain Female	brain
38	chr6:13526600-13527600	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr6:13526600-13527800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:13526600-13529800	Enhancers	Fetal Heart	heart
41	chr6:13526800-13527400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:13526800-13527600	Enhancers	Duodenum Mucosa	Duodenum
43	chr6:13526800-13527600	Enhancers	Fetal Muscle Leg	muscle
44	chr6:13526800-13527600	Enhancers	Left Ventricle	heart
45	chr6:13526800-13527600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr6:13526800-13527600	Enhancers	Small Intestine	intestine
47	chr6:13526800-13527800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr6:13526800-13527800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
49	chr6:13526800-13528200	Enhancers	HSMMtube	muscle
50	chr6:13526800-13528200	Enhancers	NHEK	skin

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