Variant report

Variant	rs9474779
Chromosome Location	chr6:54121367-54121368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7741347	0.89[GIH][hapmap]
rs9296744	0.89[GIH][hapmap]
rs9357795	0.89[GIH][hapmap]
rs9367556	0.89[GIH][hapmap]
rs9885789	0.89[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1020961	chr6:54101801-54133709	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1020329	chr6:54103966-54129147	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54119600-54121600	Enhancers	Fetal Heart	heart
2	chr6:54119800-54121800	Enhancers	Rectal Smooth Muscle	rectum
3	chr6:54119800-54121800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:54120200-54122000	Enhancers	Colon Smooth Muscle	Colon
5	chr6:54120400-54121800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr6:54120600-54121400	Enhancers	HSMMtube	muscle
7	chr6:54120800-54121400	Enhancers	Aorta	Aorta
8	chr6:54120800-54121400	Enhancers	Psoas Muscle	Psoas
9	chr6:54121000-54121400	Enhancers	Left Ventricle	heart
10	chr6:54121000-54121400	Enhancers	Right Atrium	heart
11	chr6:54121000-54121800	Enhancers	Stomach Smooth Muscle	stomach
12	chr6:54121000-54122600	Enhancers	Right Ventricle	heart
13	chr6:54121200-54121800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:54121200-54124400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:54121200-54124600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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