Variant report

Variant	rs9474786
Chromosome Location	chr6:54149110-54149111
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs28523853	0.82[AFR][1000 genomes]
rs3777645	1.00[TSI][hapmap]
rs6902373	0.89[AFR][1000 genomes]
rs6928234	1.00[ASW][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs6936714	0.95[AFR][1000 genomes]
rs6940326	1.00[YRI][hapmap]
rs7743272	0.93[YRI][hapmap]
rs9296748	0.98[AFR][1000 genomes]
rs9296749	0.91[AFR][1000 genomes]
rs9367560	0.91[AFR][1000 genomes]
rs9370287	0.92[YRI][hapmap]
rs9464050	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9464053	1.00[YRI][hapmap]
rs9474756	0.80[MKK][hapmap]
rs9474787	0.91[AFR][1000 genomes]
rs9474788	0.91[AFR][1000 genomes]
rs9474789	0.89[AFR][1000 genomes]
rs9474790	0.91[AFR][1000 genomes]
rs9474798	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9474812	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54146000-54149600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:54146000-54151600	Enhancers	NHDF-Ad	bronchial
3	chr6:54146400-54152200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:54147400-54150400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:54147400-54150400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:54147400-54150600	Weak transcription	NH-A	brain
7	chr6:54147400-54151000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:54147400-54151400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:54147600-54150200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:54147600-54150200	Weak transcription	NHEK	skin
11	chr6:54147600-54150800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:54148200-54150400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:54148400-54150400	Weak transcription	HMEC	breast
14	chr6:54148400-54150800	Weak transcription	HSMM	muscle
15	chr6:54148600-54150200	Weak transcription	Fetal Intestine Small	intestine
16	chr6:54148800-54149200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:54148800-54149800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:54149000-54149200	Enhancers	NHLF	lung
19	chr6:54149000-54150200	Weak transcription	Fetal Intestine Large	intestine
20	chr6:54149000-54150800	Weak transcription	Osteobl	bone

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