Variant report

Variant	rs9474967
Chromosome Location	chr6:54567912-54567913
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2114110	1.00[AMR][1000 genomes]
rs2397161	1.00[AMR][1000 genomes]
rs57587496	1.00[AMR][1000 genomes]
rs60341279	1.00[AMR][1000 genomes]
rs60531428	1.00[AMR][1000 genomes]
rs7341336	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54564200-54571000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:54564400-54570800	Weak transcription	Stomach Mucosa	stomach
3	chr6:54564400-54575200	Weak transcription	Fetal Lung	lung
4	chr6:54565400-54575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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