Variant report

Variant	rs9475777
Chromosome Location	chr6:56969170-56969171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56954384..56956091-chr6:56968698..56970457,2	MCF-7	breast:
2	chr6:56967474..56971022-chr6:56981374..56983597,3	K562	blood:
3	chr2:118943444..118943992-chr6:56969007..56969507,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000226856	Chromatin interaction
ENSG00000112200	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61736730	1.00[AFR][1000 genomes]
rs9464415	1.00[AFR][1000 genomes]
rs9475776	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3430228	chr6:56830972-57079281	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56958200-56979600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:56958800-56974000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:56959200-56975000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:56959600-56969400	Strong transcription	Fetal Thymus	thymus
5	chr6:56959800-56969600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:56960200-56969600	Strong transcription	Fetal Muscle Trunk	muscle
7	chr6:56961600-56969200	Strong transcription	Fetal Muscle Leg	muscle
8	chr6:56961600-56971000	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:56961800-56969200	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr6:56961800-56969600	Strong transcription	HUVEC	blood vessel
11	chr6:56961800-56970200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:56961800-56971000	Strong transcription	Placenta	Placenta
13	chr6:56961800-56972200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:56961800-56972200	Strong transcription	Dnd41	blood
15	chr6:56961800-56973400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:56961800-56975400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:56962000-56969400	Strong transcription	Primary B cells from cord blood	blood
18	chr6:56962000-56969600	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr6:56962000-56969800	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr6:56962000-56969800	Strong transcription	Fetal Brain Female	brain
21	chr6:56962000-56970400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:56962000-56971000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:56962200-56971000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:56962600-56969600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:56962600-56969800	Strong transcription	NH-A	brain
26	chr6:56962600-56969800	Strong transcription	Osteobl	bone
27	chr6:56962600-56971000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:56962600-56971600	Strong transcription	NHEK	skin
29	chr6:56962600-56974400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:56963000-56969200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:56963000-56969200	Strong transcription	Fetal Lung	lung
32	chr6:56963000-56969200	Strong transcription	HMEC	breast
33	chr6:56963000-56969200	Strong transcription	NHLF	lung
34	chr6:56963000-56969600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:56963000-56971000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:56963000-56971000	Strong transcription	NHDF-Ad	bronchial
37	chr6:56963000-56971200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:56963200-56969200	Strong transcription	Adipose Nuclei	Adipose
39	chr6:56963200-56969400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr6:56963200-56969600	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr6:56963200-56970400	Strong transcription	Brain Germinal Matrix	brain
42	chr6:56963200-56972000	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr6:56963400-56969200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:56963400-56969400	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr6:56963400-56970000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:56963600-56969200	Strong transcription	Brain Anterior Caudate	brain
47	chr6:56964200-56969200	Strong transcription	Left Ventricle	heart
48	chr6:56964800-56969200	Strong transcription	Fetal Kidney	kidney
49	chr6:56964800-56969200	Strong transcription	HepG2	liver
50	chr6:56966600-56969200	Weak transcription	Pancreas	Pancrea

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