Variant report

Variant	rs9475784
Chromosome Location	chr6:57030046-57030047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57017995..57019837-chr6:57028453..57031266,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAB23-2	chr6:57029679-57030231	ENSG00000226803.3
2	lnc-RAB23-2	chr6:57029804-57030600	ENSG00000226803.3
3	lnc-RAB23-2	chr6:57029975-57030573	ENSG00000226803.3
4	lnc-RAB23-2	chr6:57030017-57030638	ENSG00000226803.3
5	lnc-RAB23-2	chr6:57029679-57030141	ENSG00000226803.3

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs9464414	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9464415	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9475764	1.00[YRI][hapmap]
rs9475773	1.00[YRI][hapmap]
rs9475776	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9475789	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv3430228	chr6:56830972-57079281	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv462949	chr6:56973902-57098973	ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv603190	chr6:56973902-57098973	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56968200-57036400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:56985600-57036800	Weak transcription	Pancreas	Pancrea
3	chr6:56991600-57036600	Weak transcription	Small Intestine	intestine
4	chr6:56995800-57036600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:56996000-57036800	Weak transcription	Gastric	stomach
6	chr6:56996200-57036600	Weak transcription	Fetal Brain Male	brain
7	chr6:56996400-57036600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:56999800-57036600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:57001200-57036600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:57002600-57036600	Weak transcription	A549	lung
11	chr6:57006600-57036600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:57011400-57036600	Weak transcription	Stomach Mucosa	stomach
13	chr6:57012400-57036800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:57012800-57036400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:57012800-57036600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:57013200-57036600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:57013600-57036000	Weak transcription	Fetal Heart	heart
18	chr6:57016000-57036600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:57018800-57036400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:57019000-57036400	Weak transcription	Fetal Stomach	stomach
21	chr6:57019000-57036400	Weak transcription	Lung	lung
22	chr6:57019000-57036600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:57019000-57036600	Weak transcription	Aorta	Aorta
24	chr6:57019000-57036600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:57019000-57036800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:57019400-57032000	Weak transcription	HSMMtube	muscle
27	chr6:57019400-57034400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:57019400-57036400	Weak transcription	Ovary	ovary
29	chr6:57019400-57036400	Weak transcription	Thymus	Thymus
30	chr6:57020000-57032000	Weak transcription	HepG2	liver
31	chr6:57020400-57036600	Weak transcription	Colonic Mucosa	Colon
32	chr6:57020400-57036600	Weak transcription	Fetal Intestine Small	intestine
33	chr6:57020400-57036800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr6:57020600-57036400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:57021400-57036600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:57021600-57036800	Weak transcription	Colon Smooth Muscle	Colon
37	chr6:57021800-57032200	Weak transcription	GM12878-XiMat	blood
38	chr6:57021800-57036600	Weak transcription	Right Ventricle	heart
39	chr6:57021800-57036800	Weak transcription	Esophagus	oesophagus
40	chr6:57023000-57030600	Strong transcription	Primary T cells from cord blood	blood
41	chr6:57024000-57032000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:57024600-57032000	Weak transcription	HMEC	breast
43	chr6:57025200-57033400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:57025200-57033400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:57025400-57030600	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:57026400-57036800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:57026600-57036200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:57026800-57034000	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr6:57026800-57036800	Weak transcription	Left Ventricle	heart
50	chr6:57027200-57030600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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