Variant report

Variant	rs9477215
Chromosome Location	chr6:16771473-16771474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:16771002..16771740-chr6:16819771..16820462,2	MCF-7	breast:
2	chr6:16770036..16772841-chr6:16799058..16801762,2	MCF-7	breast:
3	chr16:85426678..85427943-chr6:16770526..16771538,3	K562	blood:
4	chr6:16758084..16765419-chr6:16766034..16772418,18	K562	blood:

Variant related genes	Relation type
ENSG00000272341	Chromatin interaction
ENSG00000124788	Chromatin interaction
ENSG00000229931	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12660376	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664358	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532022	chr6:16448152-16825567	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031423	chr6:16467215-16823725	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16764400-16771800	Enhancers	NHLF	lung
2	chr6:16766800-16771600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:16768400-16771800	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:16768600-16771600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:16768600-16771800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:16768600-16771800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:16768600-16771800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:16768600-16771800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:16768600-16772000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:16768600-16772000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:16768600-16772000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:16768800-16771600	Enhancers	Dnd41	blood
13	chr6:16768800-16771800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:16768800-16771800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr6:16769000-16771600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:16769000-16771600	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:16769200-16771600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:16769800-16771600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:16769800-16771800	Enhancers	Primary hematopoietic stem cells	blood
20	chr6:16769800-16771800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr6:16769800-16771800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr6:16769800-16771800	Enhancers	Colon Smooth Muscle	Colon
23	chr6:16769800-16774200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:16769800-16776800	Weak transcription	Left Ventricle	heart
25	chr6:16769800-16776800	Weak transcription	Psoas Muscle	Psoas
26	chr6:16769800-16777000	Weak transcription	Lung	lung
27	chr6:16770000-16771800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:16770000-16771800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:16770000-16772000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr6:16770000-16772000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:16770200-16771600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:16770200-16771600	Enhancers	Fetal Heart	heart
33	chr6:16770200-16772200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:16770600-16771600	Enhancers	Fetal Stomach	stomach
35	chr6:16770600-16772000	Enhancers	Fetal Muscle Leg	muscle
36	chr6:16770600-16774200	Weak transcription	Fetal Lung	lung
37	chr6:16771000-16771800	Enhancers	NHDF-Ad	bronchial
38	chr6:16771000-16773800	Weak transcription	Aorta	Aorta
39	chr6:16771000-16774200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:16771200-16771600	Enhancers	Brain Hippocampus Middle	brain
41	chr6:16771200-16771800	Enhancers	Primary B cells from peripheral blood	blood
42	chr6:16771200-16771800	Enhancers	Fetal Thymus	thymus
43	chr6:16771200-16771800	Enhancers	Thymus	Thymus
44	chr6:16771200-16771800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr6:16771200-16772800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:16771200-16773600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:16771200-16775200	Weak transcription	Liver	Liver
48	chr6:16771200-16776600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:16771200-16776600	Weak transcription	Brain Angular Gyrus	brain
50	chr6:16771400-16771600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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