Variant report

Variant	rs9478602
Chromosome Location	chr6:150554073-150554074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150548351..150551820-chr6:150552592..150556737,3	K562	blood:
2	chr6:150544515..150547384-chr6:150552847..150554983,2	K562	blood:
3	chr6:150553894..150555591-chr6:150556253..150558267,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17079471	0.81[LWK][hapmap]
rs9384261	0.86[LWK][hapmap]
rs9479981	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479992	1.00[ASW][hapmap];0.96[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9479997	0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480007	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480008	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150549800-150556400	Weak transcription	Left Ventricle	heart
2	chr6:150550000-150556600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:150550000-150558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:150550800-150554800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:150550800-150555400	Enhancers	HMEC	breast
6	chr6:150551000-150555000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:150551200-150558800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:150552400-150554200	Weak transcription	Right Ventricle	heart
9	chr6:150552400-150557600	Weak transcription	Right Atrium	heart
10	chr6:150552400-150558600	Weak transcription	Fetal Brain Female	brain
11	chr6:150552600-150555000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:150552600-150557400	Weak transcription	Fetal Lung	lung
13	chr6:150552600-150559400	Weak transcription	Lung	lung
14	chr6:150552800-150555400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150553000-150556400	Weak transcription	Fetal Heart	heart
16	chr6:150553000-150557400	Weak transcription	Fetal Brain Male	brain
17	chr6:150553400-150554400	Flanking Active TSS	NHEK	skin
18	chr6:150554000-150554200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:150554000-150554400	Enhancers	Osteobl	bone
20	chr6:150554000-150554800	Enhancers	Psoas Muscle	Psoas
21	chr6:150554000-150556000	Weak transcription	Duodenum Mucosa	Duodenum

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