Variant report

Variant	rs9478661
Chromosome Location	chr6:150615069-150615070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150613086..150616937-chr6:150621463..150623679,3	MCF-7	breast:
2	chr6:150614780..150617065-chr6:150622253..150624530,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4409190	0.83[EUR][1000 genomes]
rs55746724	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9480151	0.83[EUR][1000 genomes]
rs9480192	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv519529	chr6:150612012-150618750	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150604200-150617000	Weak transcription	Pancreas	Pancrea
2	chr6:150611600-150615400	Weak transcription	Esophagus	oesophagus
3	chr6:150613400-150616200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:150613400-150616400	Enhancers	NHEK	skin
5	chr6:150613600-150615800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150613600-150615800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150613800-150615600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:150613800-150615800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:150613800-150616400	Enhancers	K562	blood
10	chr6:150614000-150615400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:150614000-150615600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:150614200-150615400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:150614200-150615600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:150614200-150615600	Enhancers	NHDF-Ad	bronchial
15	chr6:150614200-150615600	Enhancers	Osteobl	bone
16	chr6:150614200-150616200	Enhancers	NH-A	brain
17	chr6:150614200-150616400	Enhancers	HMEC	breast
18	chr6:150614400-150615200	Enhancers	HSMMtube	muscle
19	chr6:150614400-150615400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:150614600-150615200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:150614600-150615200	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:150614800-150615200	Enhancers	Psoas Muscle	Psoas
23	chr6:150614800-150616200	Enhancers	Placenta	Placenta
24	chr6:150614800-150616400	Enhancers	Fetal Muscle Leg	muscle
25	chr6:150614800-150618200	Weak transcription	Hela-S3	cervix

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