Variant report

Variant	rs9479375
Chromosome Location	chr6:150326115-150326116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6909219	1.00[AMR][1000 genomes]
rs6926761	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv970176	chr6:150319173-150343329	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150325200-150327000	Active TSS	Hela-S3	cervix
2	chr6:150325400-150326400	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
3	chr6:150325400-150327000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:150325400-150327000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr6:150325400-150327000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr6:150325400-150327000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:150325400-150327000	Flanking Active TSS	GM12878-XiMat	blood
8	chr6:150325400-150327200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
9	chr6:150325600-150326200	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr6:150325600-150326200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr6:150325600-150326200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
12	chr6:150325600-150326200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
13	chr6:150325600-150326200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
14	chr6:150325600-150326200	Flanking Bivalent TSS/Enh	HepG2	liver
15	chr6:150325600-150326400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr6:150325600-150326400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:150325600-150326400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
18	chr6:150325600-150326400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
19	chr6:150325600-150326800	Flanking Active TSS	HMEC	breast
20	chr6:150325600-150327000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr6:150325600-150327000	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr6:150325600-150327000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr6:150325600-150327000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:150325600-150327000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:150325600-150327000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr6:150325600-150327000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
27	chr6:150325600-150327000	Active TSS	Right Ventricle	heart
28	chr6:150325600-150327000	Bivalent/Poised TSS	Thymus	Thymus
29	chr6:150325600-150327200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr6:150325600-150327200	Active TSS	A549	lung
31	chr6:150325600-150327200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
32	chr6:150325600-150327400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:150325800-150326200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
34	chr6:150325800-150326200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
35	chr6:150325800-150326200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
36	chr6:150325800-150326200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
37	chr6:150325800-150326400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:150325800-150326400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
39	chr6:150325800-150326600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:150325800-150326800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:150325800-150326800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:150325800-150326800	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
43	chr6:150325800-150326800	Active TSS	Muscle Satellite Cultured Cells	--
44	chr6:150325800-150326800	Active TSS	Aorta	Aorta
45	chr6:150325800-150326800	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr6:150325800-150327000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr6:150325800-150327000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr6:150325800-150327000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:150325800-150327000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:150325800-150327000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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