Variant report

Variant	rs9480498
Chromosome Location	chr6:150937899-150937900
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11155745	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6933485	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv464080	chr6:150923115-150941310	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv604851	chr6:150923115-150941310	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150922400-150941400	Weak transcription	Colonic Mucosa	Colon
2	chr6:150923000-150938600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:150928200-150938600	Weak transcription	Fetal Intestine Small	intestine
4	chr6:150928200-150944800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:150928400-150938600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:150928400-150938600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:150928400-150939600	Weak transcription	Brain Angular Gyrus	brain
8	chr6:150928400-150940600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:150928400-150952800	Weak transcription	Right Ventricle	heart
10	chr6:150928600-150938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:150928600-150938600	Weak transcription	Brain Substantia Nigra	brain
12	chr6:150928600-150948800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:150929000-150938600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:150929000-150938800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:150929400-150941400	Weak transcription	Fetal Stomach	stomach
16	chr6:150931000-150938600	Weak transcription	Fetal Kidney	kidney
17	chr6:150931000-150947400	Weak transcription	Placenta	Placenta
18	chr6:150931200-150938000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:150934200-150940000	Weak transcription	Left Ventricle	heart
20	chr6:150935000-150938800	Weak transcription	Gastric	stomach
21	chr6:150935000-150943800	Weak transcription	Liver	Liver
22	chr6:150935800-150940200	Weak transcription	Lung	lung
23	chr6:150936200-150938600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:150936600-150944600	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:150937000-150941400	Enhancers	Thymus	Thymus
26	chr6:150937200-150938400	Enhancers	HUVEC	blood vessel
27	chr6:150937400-150938200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:150937600-150938600	Weak transcription	Spleen	Spleen
29	chr6:150937600-150940400	Enhancers	Fetal Thymus	thymus
30	chr6:150937600-150941400	Enhancers	Primary B cells from cord blood	blood

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