The 2.0 version of rSNPBase

Variant report

Variant rs9480901
Chromosome Location chr6:109395130-109395131
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:109378400-109412000 Weak transcription Fetal Muscle Trunk muscle
2 chr6:109382000-109401200 Weak transcription Brain Hippocampus Middle brain
3 chr6:109383400-109415000 Weak transcription Lung lung
4 chr6:109384600-109408600 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr6:109387400-109397400 Weak transcription Fetal Kidney kidney
6 chr6:109388200-109397600 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr6:109388200-109397800 Weak transcription Brain Anterior Caudate brain
8 chr6:109389000-109398600 Weak transcription Right Ventricle heart
9 chr6:109389200-109401200 Weak transcription Aorta Aorta
10 chr6:109389400-109403600 Weak transcription Spleen Spleen
11 chr6:109391600-109396200 Weak transcription Psoas Muscle Psoas
12 chr6:109391600-109401000 Weak transcription Fetal Brain Female brain
13 chr6:109391800-109402200 Weak transcription Left Ventricle heart
14 chr6:109392200-109395400 Enhancers Fetal Lung lung
15 chr6:109392600-109396400 Enhancers Skeletal Muscle Male skeletal muscle
16 chr6:109392600-109399000 Enhancers Skeletal Muscle Female skeletal muscle
17 chr6:109392800-109395200 Enhancers Pancreatic Islets Pancreatic Islet
18 chr6:109392800-109395400 Enhancers Fetal Intestine Small intestine
19 chr6:109392800-109415000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr6:109393000-109397000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
21 chr6:109393000-109397800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr6:109393000-109398400 Weak transcription Stomach Smooth Muscle stomach
23 chr6:109393000-109403400 Weak transcription Small Intestine intestine
24 chr6:109393000-109412200 Weak transcription Primary T cells fromperipheralblood blood
25 chr6:109393000-109413800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
26 chr6:109393200-109400600 Weak transcription Brain Substantia Nigra brain
27 chr6:109393200-109400800 Weak transcription Brain Cingulate Gyrus brain
28 chr6:109393200-109412600 Weak transcription Fetal Thymus thymus
29 chr6:109393200-109413200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr6:109393400-109413400 Weak transcription Fetal Intestine Large intestine
31 chr6:109393400-109413400 Weak transcription Fetal Stomach stomach
32 chr6:109393600-109395400 Enhancers Fetal Heart heart
33 chr6:109393800-109395400 Enhancers Brain Angular Gyrus brain
34 chr6:109394200-109395200 Enhancers Primary B cells from cord blood blood
35 chr6:109394200-109395400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr6:109394600-109396200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
37 chr6:109394600-109397600 Weak transcription Primary hematopoietic stem cells blood
38 chr6:109394600-109397600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr6:109394600-109400600 Weak transcription Brain Inferior Temporal Lobe brain
40 chr6:109394600-109401200 Weak transcription Adipose Nuclei Adipose
41 chr6:109394600-109403400 Weak transcription Rectal Mucosa Donor 29 rectum
42 chr6:109394600-109412400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr6:109394800-109396200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr6:109394800-109397000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
45 chr6:109394800-109397000 Weak transcription Muscle Satellite Cultured Cells --
46 chr6:109394800-109397000 Weak transcription Osteobl bone
47 chr6:109394800-109397200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr6:109394800-109397200 Weak transcription Colon Smooth Muscle Colon
49 chr6:109394800-109397400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
50 chr6:109394800-109397600 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015