Variant report

Variant	rs9480913
Chromosome Location	chr6:109559817-109559818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109556893..109560362-chr6:109702019..109704753,3	K562	blood:
2	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
3	chr6:109559579..109562142-chr6:109563967..109566714,2	MCF-7	breast:
4	chr6:109554938..109560362-chr6:109702019..109707132,8	K562	blood:

Variant related genes	Relation type
ENSG00000260273	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9320277	1.00[AFR][1000 genomes]
rs9487001	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109556800-109562800	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:109556800-109564200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:109557000-109560600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:109557200-109562000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:109557200-109565000	Enhancers	NHDF-Ad	bronchial
6	chr6:109557400-109562000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr6:109557400-109562200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:109557600-109562000	Enhancers	Stomach Mucosa	stomach
9	chr6:109557600-109565200	Enhancers	Hela-S3	cervix
10	chr6:109558000-109560000	Weak transcription	Right Atrium	heart
11	chr6:109558000-109560200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:109558000-109562000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr6:109558200-109560000	Weak transcription	Brain Substantia Nigra	brain
14	chr6:109558200-109560400	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:109558200-109560400	Weak transcription	Fetal Intestine Large	intestine
16	chr6:109558200-109565000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:109558200-109565200	Enhancers	Osteobl	bone
18	chr6:109558200-109572200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:109558400-109560200	Weak transcription	HepG2	liver
20	chr6:109558400-109560400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:109558400-109560400	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:109558400-109561400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:109558600-109560000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:109558600-109561800	Weak transcription	HSMMtube	muscle
25	chr6:109558600-109562800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:109558800-109566400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr6:109559000-109560000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:109559000-109560400	Weak transcription	HSMM	muscle
29	chr6:109559000-109563400	Enhancers	Primary B cells from cord blood	blood
30	chr6:109559000-109564000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr6:109559000-109564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:109559200-109560400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:109559200-109561600	Weak transcription	Fetal Thymus	thymus
34	chr6:109559200-109564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr6:109559400-109560000	Weak transcription	Brain Angular Gyrus	brain
36	chr6:109559400-109560400	Weak transcription	Lung	lung
37	chr6:109559400-109560400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:109559400-109561200	Enhancers	K562	blood
39	chr6:109559400-109561600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:109559400-109561600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:109559400-109561600	Weak transcription	Placenta	Placenta
42	chr6:109559400-109561600	Weak transcription	Spleen	Spleen
43	chr6:109559400-109563600	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr6:109559400-109563600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:109559600-109561800	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr6:109559600-109562600	Enhancers	Adipose Nuclei	Adipose
47	chr6:109559800-109561200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr6:109559800-109561400	Weak transcription	Fetal Muscle Trunk	muscle

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