Variant report

Variant	rs9480979
Chromosome Location	chr6:109900735-109900736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12111322	0.87[AFR][1000 genomes]
rs9480970	1.00[YRI][hapmap]
rs9480975	1.00[AFR][1000 genomes]
rs9480993	1.00[YRI][hapmap]
rs9480998	1.00[YRI][hapmap]
rs9487137	1.00[AFR][1000 genomes]
rs9487140	0.89[AFR][1000 genomes]
rs9487142	1.00[AFR][1000 genomes]
rs9487144	1.00[YRI][hapmap]
rs9487177	1.00[YRI][hapmap]
rs9487196	1.00[YRI][hapmap]
rs9487212	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1019389	chr6:109868058-109987502	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538416	chr6:109868058-109987502	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv917318	chr6:109885195-109982375	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109878800-109903600	Weak transcription	Psoas Muscle	Psoas
2	chr6:109879000-109903800	Weak transcription	Thymus	Thymus
3	chr6:109879000-109906000	Weak transcription	Left Ventricle	heart
4	chr6:109879000-109917400	Weak transcription	Aorta	Aorta
5	chr6:109881200-109902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr6:109885000-109902400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:109886000-109910600	Weak transcription	Primary B cells from cord blood	blood
8	chr6:109899200-109901800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:109899600-109901600	Weak transcription	Lung	lung
10	chr6:109899800-109901000	Strong transcription	Primary T cells from cord blood	blood
11	chr6:109900200-109900800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:109900200-109900800	Enhancers	GM12878-XiMat	blood
13	chr6:109900400-109900800	Enhancers	NHEK	skin
14	chr6:109900400-109901200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:109900600-109902400	Weak transcription	Adipose Nuclei	Adipose
16	chr6:109900600-109902400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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