Variant report

Variant	rs948139
Chromosome Location	chr11:102501879-102501880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2701977	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28442032	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs948138	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3392414	chr11:102501322-102507590	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3399477	chr11:102501353-102507374	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102500000-102510600	Weak transcription	A549	lung
2	chr11:102501400-102502200	Flanking Active TSS	Liver	Liver
3	chr11:102501400-102502200	Flanking Active TSS	HepG2	liver
4	chr11:102501600-102502000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:102501600-102502000	Enhancers	Duodenum Mucosa	Duodenum
6	chr11:102501600-102502200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:102501600-102502200	Enhancers	Fetal Stomach	stomach
8	chr11:102501600-102502600	Enhancers	Fetal Intestine Small	intestine
9	chr11:102501600-102502800	Enhancers	Fetal Intestine Large	intestine
10	chr11:102501800-102502000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:102501800-102502000	Bivalent Enhancer	Osteobl	bone
12	chr11:102501800-102502200	Enhancers	Fetal Lung	lung
13	chr11:102501800-102502600	Enhancers	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links