Variant report

Variant	rs9481423
Chromosome Location	chr6:114466464-114466465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1022387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153467	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199095	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401771	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889556	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1964777	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964778	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945991	0.94[YRI][hapmap]
rs884817	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320480	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374439	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9387192	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481425	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1034897	chr6:114454186-114555679	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114430800-114477800	Weak transcription	Brain Anterior Caudate	brain
2	chr6:114455400-114466800	Weak transcription	Pancreas	Pancrea
3	chr6:114457000-114466800	Weak transcription	Brain Angular Gyrus	brain
4	chr6:114462000-114466600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:114462800-114471400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:114465200-114466800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:114465200-114467200	Flanking Active TSS	HepG2	liver
8	chr6:114465200-114467200	Enhancers	HSMM	muscle
9	chr6:114465400-114467800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:114465800-114466800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:114465800-114466800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr6:114465800-114467000	Enhancers	Placenta	Placenta
13	chr6:114465800-114467000	Enhancers	HSMMtube	muscle
14	chr6:114465800-114467200	Enhancers	Fetal Heart	heart
15	chr6:114466000-114467000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:114466000-114467000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr6:114466000-114467000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:114466000-114467000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:114466000-114467000	Enhancers	Gastric	stomach
20	chr6:114466000-114467200	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:114466000-114467200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:114466000-114467200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:114466000-114467200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:114466200-114466600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:114466200-114467000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:114466200-114467000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:114466200-114467000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:114466200-114467000	Flanking Active TSS	Hela-S3	cervix
29	chr6:114466400-114466600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:114466400-114466800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr6:114466400-114467000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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