Variant report

Variant	rs9481774
Chromosome Location	chr6:118645767-118645768
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118631014..118632814-chr6:118644282..118647263,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12332888	1.00[EUR][1000 genomes]
rs28436726	0.83[AFR][1000 genomes]
rs4374854	1.00[AMR][1000 genomes]
rs73768619	1.00[AMR][1000 genomes]
rs73768624	1.00[AMR][1000 genomes]
rs9489346	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118635400-118646400	Weak transcription	Right Ventricle	heart
2	chr6:118637400-118646400	Weak transcription	Left Ventricle	heart
3	chr6:118641400-118646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:118641400-118647800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:118641400-118648400	Weak transcription	Psoas Muscle	Psoas
6	chr6:118641800-118646600	Weak transcription	Right Atrium	heart
7	chr6:118642200-118646600	Weak transcription	NHLF	lung
8	chr6:118643200-118646400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:118643400-118646600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:118644800-118645800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:118644800-118645800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:118644800-118645800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr6:118644800-118646000	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:118644800-118647200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:118644800-118649000	Enhancers	Aorta	Aorta
16	chr6:118645000-118645800	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr6:118645000-118645800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:118645000-118647200	Enhancers	Fetal Heart	heart
19	chr6:118645400-118645800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:118645400-118645800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:118645400-118645800	Enhancers	Rectal Smooth Muscle	rectum
22	chr6:118645400-118646000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr6:118645400-118648400	Enhancers	Stomach Smooth Muscle	stomach
24	chr6:118645400-118649000	Enhancers	Colon Smooth Muscle	Colon
25	chr6:118645600-118646200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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