Variant report

Variant	rs9481852
Chromosome Location	chr6:119039866-119039867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1628990	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1688619	0.93[ASN][1000 genomes]
rs1688623	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1688624	0.93[ASN][1000 genomes]
rs1771744	0.80[ASN][1000 genomes]
rs2185559	0.93[ASN][1000 genomes]
rs6933085	0.93[ASN][1000 genomes]
rs794876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs794877	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs794881	0.93[ASN][1000 genomes]
rs9481855	0.85[ASN][1000 genomes]
rs9489511	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
12	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
14	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
15	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	esv3473224	chr6:119039332-119040517	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3473225	chr6:119039392-119040485	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3473223	chr6:119039408-119040441	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3473226	chr6:119039466-119040411	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv16578	chr6:119039478-119040493	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119028400-119040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:119031600-119040200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:119031600-119040400	Weak transcription	Psoas Muscle	Psoas
4	chr6:119031600-119044400	Weak transcription	Fetal Heart	heart
5	chr6:119031600-119045600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:119032000-119040000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:119034600-119040000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:119034600-119040000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:119034600-119040600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:119034800-119040000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:119035000-119040400	Weak transcription	HSMM	muscle
12	chr6:119035800-119040000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:119037200-119040000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:119037200-119040000	Weak transcription	HSMMtube	muscle
15	chr6:119037200-119040200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:119037200-119040400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:119037200-119040600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:119039000-119040200	Weak transcription	NHLF	lung
19	chr6:119039000-119040400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:119039000-119040400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:119039000-119042200	Enhancers	Thymus	Thymus
22	chr6:119039000-119043000	Enhancers	Fetal Thymus	thymus
23	chr6:119039000-119043800	Enhancers	Primary T cells from cord blood	blood
24	chr6:119039000-119043800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr6:119039000-119045000	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr6:119039000-119045000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr6:119039000-119046000	Enhancers	Primary B cells from peripheral blood	blood
28	chr6:119039200-119041200	Enhancers	Fetal Muscle Leg	muscle
29	chr6:119039200-119043800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr6:119039400-119041200	Enhancers	K562	blood
31	chr6:119039400-119042000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:119039400-119043000	Enhancers	Dnd41	blood
33	chr6:119039400-119043200	Enhancers	Primary B cells from cord blood	blood
34	chr6:119039400-119048600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr6:119039600-119041200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:119039600-119042200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:119039800-119040800	Enhancers	NHDF-Ad	bronchial
38	chr6:119039800-119041600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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