Variant report

Variant	rs9481880
Chromosome Location	chr6:119344020-119344021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11753454	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35375291	0.90[ASN][1000 genomes]
rs62421116	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119293200-119345400	Weak transcription	Lung	lung
2	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:119318600-119344200	Weak transcription	Fetal Lung	lung
4	chr6:119325400-119349600	Weak transcription	Brain Angular Gyrus	brain
5	chr6:119328600-119348800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:119330400-119347000	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:119331000-119344200	Weak transcription	Gastric	stomach
8	chr6:119331000-119344400	Weak transcription	Fetal Brain Female	brain
9	chr6:119331400-119345200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:119331400-119345800	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:119331400-119349800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:119331400-119356000	Weak transcription	Ovary	ovary
13	chr6:119331600-119349200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:119331600-119355800	Weak transcription	K562	blood
15	chr6:119332400-119344200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:119334200-119355800	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:119334800-119347000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:119336400-119345400	Weak transcription	Pancreas	Pancrea
19	chr6:119337800-119345200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:119338000-119344200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:119339400-119356200	Weak transcription	Placenta	Placenta
22	chr6:119339600-119344200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:119340200-119347000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:119341400-119346200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:119341400-119356200	Weak transcription	Fetal Stomach	stomach
26	chr6:119342800-119344800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:119343400-119345400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:119343400-119356400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:119343600-119355800	Weak transcription	Fetal Intestine Small	intestine
30	chr6:119343800-119349800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:119344000-119344200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:119344000-119344200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr6:119344000-119344400	Enhancers	Brain Germinal Matrix	brain
34	chr6:119344000-119345000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:119344000-119345200	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr6:119344000-119345200	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr6:119344000-119347000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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