Variant report

Variant	rs9482884
Chromosome Location	chr6:128792323-128792324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128790806..128793680-chr6:128840428..128843028,2	MCF-7	breast:
2	chr6:128785920..128790312-chr6:128790830..128794424,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9482883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9491963	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128773400-128795200	Weak transcription	HSMMtube	muscle
2	chr6:128780400-128795400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:128785600-128794400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:128785600-128795200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:128785600-128795400	Weak transcription	A549	lung
6	chr6:128786200-128792800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:128786400-128792800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:128786400-128792800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:128786800-128795600	Weak transcription	HSMM	muscle
10	chr6:128787200-128792800	Weak transcription	Small Intestine	intestine
11	chr6:128787200-128794800	Weak transcription	Right Ventricle	heart
12	chr6:128787200-128795800	Weak transcription	Left Ventricle	heart
13	chr6:128787200-128795800	Weak transcription	Pancreas	Pancrea
14	chr6:128787400-128792800	Weak transcription	Brain Anterior Caudate	brain
15	chr6:128787400-128793200	Weak transcription	Fetal Intestine Large	intestine
16	chr6:128787600-128794800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:128787600-128794800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:128787600-128795200	Weak transcription	NHEK	skin
19	chr6:128787600-128799200	Weak transcription	HepG2	liver
20	chr6:128787800-128792800	Weak transcription	Brain Angular Gyrus	brain
21	chr6:128787800-128792800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:128788000-128799000	Weak transcription	Liver	Liver
23	chr6:128788400-128795400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:128788800-128795000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:128790600-128796400	Weak transcription	Stomach Mucosa	stomach
26	chr6:128791000-128793400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:128791200-128792400	Weak transcription	Brain Substantia Nigra	brain
28	chr6:128791200-128795600	Weak transcription	Fetal Heart	heart
29	chr6:128791200-128796000	Weak transcription	Gastric	stomach
30	chr6:128791200-128800000	Weak transcription	Aorta	Aorta
31	chr6:128791800-128793600	Enhancers	Brain Hippocampus Middle	brain

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