Variant report

Variant	rs9482899
Chromosome Location	chr6:128860342-128860343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128858016..128860798-chr6:128866625..128868395,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1341601	0.87[AFR][1000 genomes]
rs13437530	0.93[AFR][1000 genomes]
rs13437537	0.93[AFR][1000 genomes]
rs7356814	0.84[AFR][1000 genomes]
rs7356816	0.84[AFR][1000 genomes]
rs766305	0.87[AFR][1000 genomes]
rs7748465	0.88[AFR][1000 genomes]
rs7751016	0.93[AFR][1000 genomes]
rs7760423	0.93[AFR][1000 genomes]
rs9321123	0.87[AFR][1000 genomes]
rs9482896	0.87[AFR][1000 genomes]
rs9491978	0.80[AFR][1000 genomes]
rs9491979	0.80[AFR][1000 genomes]
rs9491980	0.80[AFR][1000 genomes]
rs9491981	0.87[AFR][1000 genomes]
rs9491982	0.87[AFR][1000 genomes]
rs9491987	0.87[AFR][1000 genomes]
rs9491989	0.87[AFR][1000 genomes]
rs9491992	0.93[AFR][1000 genomes]
rs9491993	0.93[AFR][1000 genomes]
rs9491995	0.90[AFR][1000 genomes]
rs9491998	0.93[AFR][1000 genomes]
rs9492016	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128859400-128862200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:128859400-128863000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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