Variant report

Variant	rs9482955
Chromosome Location	chr6:129236954-129236955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10499143	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10499145	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11154451	1.00[ASN][1000 genomes]
rs11961191	1.00[ASN][1000 genomes]
rs11966151	1.00[ASN][1000 genomes]
rs12332864	1.00[ASN][1000 genomes]
rs12333077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204384	1.00[ASN][1000 genomes]
rs17056587	1.00[ASN][1000 genomes]
rs17723217	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17723635	1.00[ASN][1000 genomes]
rs17779264	1.00[ASN][1000 genomes]
rs17779977	1.00[ASN][1000 genomes]
rs28485035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34302582	1.00[ASN][1000 genomes]
rs35704827	1.00[ASN][1000 genomes]
rs4316028	1.00[ASN][1000 genomes]
rs4452666	1.00[ASN][1000 genomes]
rs4515402	1.00[ASN][1000 genomes]
rs4552747	1.00[ASN][1000 genomes]
rs4563739	1.00[ASN][1000 genomes]
rs4585583	1.00[ASN][1000 genomes]
rs68083303	1.00[ASN][1000 genomes]
rs6908604	1.00[ASN][1000 genomes]
rs6909374	1.00[ASN][1000 genomes]
rs6914657	1.00[ASN][1000 genomes]
rs6915788	1.00[ASN][1000 genomes]
rs6941938	0.82[AFR][1000 genomes]
rs7450990	1.00[ASN][1000 genomes]
rs7738059	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs774283	1.00[CHD][hapmap]
rs7754537	1.00[ASN][1000 genomes]
rs7770018	1.00[ASN][1000 genomes]
rs7776116	1.00[ASN][1000 genomes]
rs9482916	1.00[CHD][hapmap]
rs9482952	1.00[ASN][1000 genomes]
rs9482953	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482954	1.00[ASN][1000 genomes]
rs9482956	1.00[ASN][1000 genomes]
rs9482957	1.00[ASN][1000 genomes]
rs9482960	1.00[ASN][1000 genomes]
rs9492055	1.00[CHD][hapmap]
rs9492142	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492149	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492155	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492165	1.00[CEU][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9492168	0.83[LWK][hapmap];0.81[AFR][1000 genomes]
rs9492170	0.82[ASW][hapmap];1.00[LWK][hapmap];1.00[ASN][1000 genomes]
rs9885790	0.83[LWK][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830802	chr6:129174076-129382838	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:129208000-129239800	Weak transcription	NHDF-Ad	bronchial
2	chr6:129208400-129250400	Weak transcription	HSMMtube	muscle
3	chr6:129220200-129250000	Weak transcription	Left Ventricle	heart
4	chr6:129224200-129240800	Weak transcription	HSMM	muscle
5	chr6:129233800-129238000	Enhancers	Fetal Heart	heart
6	chr6:129234200-129244800	Weak transcription	Ovary	ovary
7	chr6:129235200-129240200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:129235400-129237000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:129235600-129250000	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links