Variant report
| Variant | rs9483211 |
|---|---|
| Chromosome Location | chr6:131390305-131390306 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:131383954..131386540-chr6:131387983..131390748,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000079819 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs28664083 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58336107 | 1.00[AMR][1000 genomes] |
| rs9321274 | 1.00[AMR][1000 genomes] |
| rs9483198 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9483202 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9483204 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492744 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492751 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492752 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492754 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492765 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492778 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492789 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492798 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9492823 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032955 | chr6:131298803-131818502 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv538443 | chr6:131298803-131818502 | Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:131387200-131392800 | Weak transcription | K562 | blood |
