Variant report

Variant	rs9483241
Chromosome Location	chr6:131591500-131591501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12525492	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs28841032	0.82[AFR][1000 genomes]
rs3777495	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3777497	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9492888	0.92[AFR][1000 genomes]
rs9492890	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9492892	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv886664	chr6:131443843-131754930	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv886665	chr6:131518894-131611309	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
5	nsv830808	chr6:131521115-131735320	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv886666	chr6:131573433-131666295	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131571800-131592600	Weak transcription	Fetal Thymus	thymus
2	chr6:131571800-131596800	Weak transcription	Lung	lung
3	chr6:131571800-131603000	Weak transcription	Esophagus	oesophagus
4	chr6:131571800-131614400	Weak transcription	Gastric	stomach
5	chr6:131572200-131613000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:131573600-131610400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:131574200-131601600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:131574200-131601600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:131575600-131602400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:131577000-131601600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:131577400-131601400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:131579000-131597600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:131580600-131602400	Weak transcription	Small Intestine	intestine
14	chr6:131580600-131602600	Weak transcription	Right Ventricle	heart
15	chr6:131580600-131606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:131580800-131605000	Weak transcription	Fetal Heart	heart
17	chr6:131581200-131596600	Weak transcription	Pancreas	Pancrea
18	chr6:131583400-131591800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:131587000-131592000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:131587400-131614400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:131587600-131602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:131589400-131601400	Weak transcription	Brain Angular Gyrus	brain
23	chr6:131590200-131591800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr6:131590200-131592000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
25	chr6:131590400-131591600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:131590400-131591800	Strong transcription	Fetal Lung	lung
27	chr6:131590800-131591600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
28	chr6:131590800-131591800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:131590800-131592200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:131590800-131592200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr6:131590800-131601400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr6:131590800-131610200	Weak transcription	Fetal Stomach	stomach
33	chr6:131591000-131591600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
34	chr6:131591000-131591800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:131591000-131591800	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr6:131591000-131592000	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr6:131591000-131614800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr6:131591200-131591600	ZNF genes & repeats	Liver	Liver
39	chr6:131591200-131591800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr6:131591200-131592000	ZNF genes & repeats	Primary B cells from cord blood	blood
41	chr6:131591200-131602600	Weak transcription	Left Ventricle	heart
42	chr6:131591200-131603000	Weak transcription	Aorta	Aorta
43	chr6:131591400-131591800	ZNF genes & repeats	Adipose Nuclei	Adipose
44	chr6:131591400-131592000	ZNF genes & repeats	Brain Hippocampus Middle	brain
45	chr6:131591400-131592200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
46	chr6:131591400-131592200	ZNF genes & repeats	Brain Anterior Caudate	brain
47	chr6:131591400-131592400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr6:131591400-131595400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:131591400-131596800	Weak transcription	Ovary	ovary
50	chr6:131591400-131598600	Weak transcription	Fetal Intestine Large	intestine

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