Variant report

Variant	rs9483363
Chromosome Location	chr6:132277921-132277922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132454814-132459405	GM12878	blood:
2	6:132269655-132282174..6:132434977-132438109	Hela-S3	cervix:
3	6:132269655-132282174..6:132402790-132406656	H1-hESC	embryonic stem cell:	embryo
4	chr6:132270354..132272502-chr6:132277537..132280561,3	MCF-7	breast:
5	6:132269655-132282174..6:132480387-132483283	H1-hESC	embryonic stem cell:	embryo
6	chr6:132270832..132274014-chr6:132274409..132278281,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265669	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000236166	Chromatin interaction
ENSG00000228495	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1931002	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2151532	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132272600-132279400	Weak transcription	Pancreas	Pancrea
2	chr6:132273000-132278800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:132273000-132279400	Enhancers	HepG2	liver
4	chr6:132275600-132299800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:132275800-132279400	Weak transcription	HSMM	muscle
6	chr6:132275800-132279400	Weak transcription	HSMMtube	muscle
7	chr6:132276200-132279400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:132276200-132279800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:132276200-132280400	Weak transcription	Colonic Mucosa	Colon
10	chr6:132276200-132287400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:132276400-132279400	Weak transcription	Fetal Intestine Large	intestine
12	chr6:132276400-132281800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:132276400-132282000	Weak transcription	Aorta	Aorta
14	chr6:132276600-132297800	Weak transcription	Ovary	ovary
15	chr6:132276800-132279400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:132277000-132278400	Weak transcription	Fetal Heart	heart
17	chr6:132277000-132279000	Weak transcription	Fetal Intestine Small	intestine
18	chr6:132277000-132279200	Weak transcription	A549	lung
19	chr6:132277000-132279400	Weak transcription	Osteobl	bone
20	chr6:132277000-132281400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:132277000-132281400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:132277000-132287800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:132277200-132279200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:132277200-132287600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:132277400-132278400	Weak transcription	Stomach Mucosa	stomach
26	chr6:132277400-132278800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:132277400-132278800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:132277400-132281400	Weak transcription	HUVEC	blood vessel
29	chr6:132277400-132287600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:132277400-132291200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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