Variant report

Variant	rs9483364
Chromosome Location	chr6:132281798-132281799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132454814-132459405	GM12878	blood:
2	6:132269655-132282174..6:132434977-132438109	Hela-S3	cervix:
3	chr6:132281702..132282383-chr6:132538997..132539850,2	MCF-7	breast:
4	6:132269655-132282174..6:132402790-132406656	H1-hESC	embryonic stem cell:	embryo
5	6:132269655-132282174..6:132480387-132483283	H1-hESC	embryonic stem cell:	embryo

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENPP1-5	chr6:132281283-132283398	NONHSAT114933

Variant related genes	Relation type
ENSG00000265669	Chromatin interaction
ENSG00000236166	Chromatin interaction
ENSG00000228495	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1475723	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.84[TSI][hapmap];0.93[ASN][1000 genomes]
rs1930995	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs1930996	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.93[ASN][1000 genomes]
rs1931001	0.89[YRI][hapmap]
rs233908	0.88[CEU][hapmap]
rs7767139	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs7767582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs928503	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs928504	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9388953	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9483365	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs9493153	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9493157	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs9493160	1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9483364	VNN1	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132275600-132299800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:132276200-132287400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132276400-132281800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:132276400-132282000	Weak transcription	Aorta	Aorta
5	chr6:132276600-132297800	Weak transcription	Ovary	ovary
6	chr6:132277000-132287800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:132277200-132287600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:132277400-132287600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:132277400-132291200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:132279400-132282200	Enhancers	Liver	Liver
12	chr6:132280000-132281800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:132280000-132282200	Enhancers	HepG2	liver
14	chr6:132280000-132284000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:132280400-132282000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:132280800-132293800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:132281400-132282200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:132281400-132282200	Enhancers	HUVEC	blood vessel
19	chr6:132281400-132282400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:132281600-132282200	Enhancers	Osteobl	bone
21	chr6:132281600-132284800	Weak transcription	Stomach Mucosa	stomach

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