Variant report

Variant	rs9483572
Chromosome Location	chr6:133620583-133620584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10155794	1.00[EUR][1000 genomes]
rs11970056	0.85[AMR][1000 genomes]
rs17062266	1.00[EUR][1000 genomes]
rs17062425	1.00[EUR][1000 genomes]
rs17062451	1.00[EUR][1000 genomes]
rs17062457	1.00[EUR][1000 genomes]
rs3777820	1.00[EUR][1000 genomes]
rs58720665	1.00[EUR][1000 genomes]
rs6905230	1.00[EUR][1000 genomes]
rs73557751	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9483570	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9483571	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9493584	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9493587	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493588	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9493592	0.85[AMR][1000 genomes]
rs9493598	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886680	chr6:133613759-133663021	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133599000-133629000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:133613000-133630600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:133613000-133655000	Weak transcription	Hela-S3	cervix
4	chr6:133617600-133621600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:133618200-133620800	Enhancers	Psoas Muscle	Psoas
6	chr6:133620000-133621600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:133620200-133620800	Enhancers	Left Ventricle	heart
8	chr6:133620400-133622600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:133620400-133622800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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