Variant report

Variant	rs9484713
Chromosome Location	chr6:143561812-143561813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143510674..143513205-chr6:143559904..143561973,2	K562	blood:
2	chr6:143549517..143552462-chr6:143560418..143563692,3	K562	blood:
3	chr6:143544038..143546858-chr6:143561031..143564027,2	K562	blood:
4	chr6:143557083..143562017-chr6:143562858..143567253,5	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9496545	0.90[AMR][1000 genomes]
rs9496546	0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9484713	PLAGL1	cis	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
3	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143545600-143564000	Weak transcription	Right Atrium	heart
5	chr6:143546000-143576200	Weak transcription	HepG2	liver
6	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
9	chr6:143555400-143562000	Weak transcription	Ovary	ovary
10	chr6:143556200-143565600	Weak transcription	HMEC	breast
11	chr6:143557600-143574000	Weak transcription	Left Ventricle	heart
12	chr6:143557600-143575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:143557800-143564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:143557800-143567000	Weak transcription	Fetal Intestine Small	intestine
15	chr6:143558000-143562000	Weak transcription	NHDF-Ad	bronchial
16	chr6:143559000-143562400	Weak transcription	Adipose Nuclei	Adipose
17	chr6:143559200-143562000	Weak transcription	Brain Anterior Caudate	brain
18	chr6:143559600-143563800	Strong transcription	Liver	Liver
19	chr6:143559800-143564800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:143560400-143562000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:143560800-143562000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143561400-143564000	Weak transcription	K562	blood
23	chr6:143561400-143564800	Weak transcription	NHEK	skin
24	chr6:143561600-143563600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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