Variant report

Variant	rs9484791
Chromosome Location	chr6:144003276-144003277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143999802..144002439-chr6:144003209..144005357,2	MCF-7	breast:
2	chr6:143998230..144000986-chr6:144001245..144005130,4	K562	blood:
3	chr6:143997975..143999811-chr6:144003059..144004885,2	K562	blood:
4	chr6:143998977..144000615-chr6:144001616..144004213,2	MCF-7	breast:
5	chr6:144002192..144005187-chr6:144008261..144010591,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112419	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10046128	0.91[AFR][1000 genomes]
rs6914303	0.89[AMR][1000 genomes]
rs7738603	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742129	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484787	0.89[AMR][1000 genomes]
rs9484789	0.89[AMR][1000 genomes]
rs9496722	0.89[AMR][1000 genomes]
rs9496727	0.88[AFR][1000 genomes]
rs9496730	0.88[AFR][1000 genomes]
rs9496737	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143999800-144003400	Weak transcription	Gastric	stomach
2	chr6:144000000-144003400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:144000000-144005600	Weak transcription	Small Intestine	intestine
4	chr6:144000400-144003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:144000600-144003400	Weak transcription	Esophagus	oesophagus
6	chr6:144000600-144003400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:144000600-144003400	Weak transcription	Fetal Intestine Small	intestine
8	chr6:144000600-144003400	Weak transcription	Lung	lung
9	chr6:144000600-144007800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:144000600-144008800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:144000800-144003400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:144000800-144008000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:144001400-144003400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:144001400-144004000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:144001600-144003400	Weak transcription	Fetal Stomach	stomach
16	chr6:144001600-144003600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:144001600-144004000	Weak transcription	Fetal Kidney	kidney
18	chr6:144001800-144003400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:144001800-144003400	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:144001800-144003400	Weak transcription	Psoas Muscle	Psoas
21	chr6:144001800-144007800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:144001800-144008000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:144001800-144012200	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:144002000-144003400	Weak transcription	Left Ventricle	heart
25	chr6:144002000-144003800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr6:144002000-144005200	Weak transcription	Right Ventricle	heart
27	chr6:144002000-144007600	Weak transcription	Ovary	ovary
28	chr6:144002000-144007800	Weak transcription	Aorta	Aorta
29	chr6:144002000-144007800	Weak transcription	NHDF-Ad	bronchial
30	chr6:144002000-144008400	Weak transcription	Placenta	Placenta
31	chr6:144002000-144013000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr6:144002200-144007800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:144002200-144008000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:144002400-144005800	Weak transcription	Fetal Lung	lung
35	chr6:144002400-144007800	Weak transcription	Osteobl	bone
36	chr6:144002600-144003400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:144002600-144003400	Weak transcription	HUVEC	blood vessel
38	chr6:144002600-144004000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:144002800-144003400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:144002800-144006800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:144002800-144011200	Weak transcription	Hela-S3	cervix
42	chr6:144003000-144003400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:144003000-144003600	Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr6:144003000-144005000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:144003000-144008000	Weak transcription	Right Atrium	heart
46	chr6:144003200-144003400	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr6:144003200-144003400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
48	chr6:144003200-144003600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:144003200-144003800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:144003200-144004400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin

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