Variant report

Variant	rs9484799
Chromosome Location	chr6:144038594-144038595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144037482..144039752-chr6:144079011..144080855,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17592629	0.91[EUR][1000 genomes]
rs56404863	0.82[EUR][1000 genomes]
rs7769992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144011600-144053200	Weak transcription	Hela-S3	cervix
2	chr6:144014200-144039800	Weak transcription	Pancreas	Pancrea
3	chr6:144017200-144044200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:144017800-144047200	Weak transcription	K562	blood
5	chr6:144018200-144044400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:144022200-144052600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:144022800-144052800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:144022800-144064200	Weak transcription	NH-A	brain
11	chr6:144023000-144046200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:144023200-144039400	Weak transcription	HUVEC	blood vessel
13	chr6:144023200-144043800	Weak transcription	Fetal Kidney	kidney
14	chr6:144023200-144045800	Weak transcription	NHLF	lung
15	chr6:144023400-144039400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:144023800-144048600	Weak transcription	Psoas Muscle	Psoas
17	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:144024600-144052800	Weak transcription	Osteobl	bone
19	chr6:144025400-144039400	Weak transcription	Ovary	ovary
20	chr6:144025400-144048000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:144027600-144052600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr6:144027800-144046400	Weak transcription	Gastric	stomach
23	chr6:144027800-144056000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:144028000-144041400	Weak transcription	Liver	Liver
25	chr6:144028000-144054600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:144028200-144052800	Weak transcription	Stomach Mucosa	stomach
27	chr6:144029600-144047800	Weak transcription	NHDF-Ad	bronchial
28	chr6:144030800-144038600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:144030800-144039400	Weak transcription	Adipose Nuclei	Adipose
30	chr6:144030800-144043800	Weak transcription	Fetal Heart	heart
31	chr6:144031000-144039600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:144031000-144041600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:144031000-144054600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:144031200-144044400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:144031400-144041200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:144031400-144044600	Weak transcription	Primary hematopoietic stem cells	blood
38	chr6:144031400-144054000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:144031600-144047800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:144031800-144044400	Weak transcription	Primary T cells from cord blood	blood
41	chr6:144032000-144040200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:144032200-144044200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:144032400-144045800	Weak transcription	HSMM	muscle
44	chr6:144032800-144049200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:144033000-144052600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr6:144033200-144043800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:144033400-144039400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:144033600-144046000	Weak transcription	Primary B cells from cord blood	blood
49	chr6:144034000-144038600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr6:144034000-144039800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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