Variant report

Variant	rs9485040
Chromosome Location	chr6:146338579-146338580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9485041	1.00[AFR][1000 genomes]
rs9485042	1.00[AFR][1000 genomes]
rs9497441	1.00[AFR][1000 genomes]
rs9497445	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146337600-146339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:146337800-146339800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:146338400-146339400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:146338400-146339600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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