Variant report

Variant	rs9485082
Chromosome Location	chr6:100914256-100914257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:100914228-100914266	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr6:100912882-100916388	H1-neurons	neurons:	n/a	n/a
3	TCF12	chr6:100914101-100914373	H1-hESC	embryonic stem cell:	n/a	chr6:100914189-100914196
4	SUZ12	chr6:100910832-100914607	NT2-D1	testis:	n/a	n/a
5	SUZ12	chr6:100912951-100915101	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr6:100912776-100916575	H1-neurons	neurons:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100914205..100915074-chr6:100925463..100926076,2	MCF-7	breast:

Variant related genes	Relation type
SIM1	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3798484	0.89[AMR][1000 genomes]
rs58927095	0.89[AMR][1000 genomes]
rs6942018	0.89[AMR][1000 genomes]
rs7755275	0.89[AMR][1000 genomes]
rs7766553	1.00[AMR][1000 genomes]
rs9322060	0.89[AMR][1000 genomes]
rs9497479	0.89[AMR][1000 genomes]
rs9497547	0.89[AMR][1000 genomes]
rs9497585	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028122	chr6:100774245-100964347	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1023710	chr6:100810738-101001115	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv538388	chr6:100810738-101001115	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100906800-100914400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:100906800-100914600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:100908000-100914800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr6:100911000-100914400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:100911000-100914600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:100911800-100916000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr6:100912200-100915800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:100913200-100914800	Weak transcription	Gastric	stomach
9	chr6:100913400-100914400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr6:100913400-100915200	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
11	chr6:100913400-100915600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr6:100913600-100914600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr6:100913800-100914600	Bivalent Enhancer	Adipose Nuclei	Adipose
14	chr6:100913800-100916000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
15	chr6:100914000-100914400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:100914000-100914400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
17	chr6:100914000-100914600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr6:100914000-100915200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:100914200-100914400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:100914200-100914800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:100914200-100915200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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