Variant report

Variant	rs9486437
Chromosome Location	chr6:107126706-107126707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1801391	1.00[AMR][1000 genomes]
rs57227217	1.00[AMR][1000 genomes]
rs57658061	1.00[AMR][1000 genomes]
rs59766351	1.00[AMR][1000 genomes]
rs61113468	1.00[AMR][1000 genomes]
rs6911770	1.00[AMR][1000 genomes]
rs6913393	1.00[AMR][1000 genomes]
rs6916724	1.00[AMR][1000 genomes]
rs6920562	1.00[AMR][1000 genomes]
rs6930489	1.00[AMR][1000 genomes]
rs6933695	1.00[AMR][1000 genomes]
rs6934549	1.00[AMR][1000 genomes]
rs73761864	1.00[AMR][1000 genomes]
rs7741144	1.00[AMR][1000 genomes]
rs7743579	1.00[AMR][1000 genomes]
rs7770833	1.00[AMR][1000 genomes]
rs8910	1.00[AMR][1000 genomes]
rs9486439	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107117600-107130800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:107126000-107130600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:107126200-107130400	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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