Variant report

Variant	rs9487016
Chromosome Location	chr6:109579083-109579084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109578534..109581492-chr6:109583225..109585725,2	K562	blood:
2	chr6:109573600..109575785-chr6:109578513..109582228,5	K562	blood:
3	chr6:109572074..109573925-chr6:109578773..109580285,2	MCF-7	breast:
4	chr6:109574243..109576098-chr6:109577884..109580238,2	MCF-7	breast:
5	chr6:109573371..109575785-chr6:109578513..109580887,3	K562	blood:
6	chr6:109572927..109577072-chr6:109577808..109581744,6	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9320283	1.00[AMR][1000 genomes]
rs9487024	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487037	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487047	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109564000-109590400	Weak transcription	Psoas Muscle	Psoas
2	chr6:109572800-109590400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:109572800-109595200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:109573200-109589800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:109573600-109590200	Weak transcription	Gastric	stomach
6	chr6:109574400-109579400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:109574600-109583400	Weak transcription	Placenta	Placenta
8	chr6:109575200-109582800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:109575800-109589200	Weak transcription	Pancreas	Pancrea
10	chr6:109576600-109579600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:109577200-109583400	Weak transcription	Fetal Kidney	kidney
12	chr6:109577600-109581800	Weak transcription	Adipose Nuclei	Adipose
13	chr6:109577600-109583000	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:109577800-109581600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:109577800-109582200	Weak transcription	Fetal Stomach	stomach
16	chr6:109578000-109582000	Weak transcription	Fetal Lung	lung
17	chr6:109578400-109579800	Enhancers	Liver	Liver
18	chr6:109578800-109579600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:109578800-109580400	Enhancers	HepG2	liver
20	chr6:109579000-109579200	Weak transcription	Aorta	Aorta
21	chr6:109579000-109579800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:109579000-109580600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:109579000-109583200	Weak transcription	Fetal Muscle Trunk	muscle

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