Variant report

Variant	rs9488256
Chromosome Location	chr6:114069436-114069437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10872106	0.80[AMR][1000 genomes]
rs11153440	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11153450	0.81[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs12204831	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1980375	0.81[CEU][hapmap];0.89[CHB][hapmap]
rs1997216	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6919507	0.84[CHB][hapmap]
rs9372377	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9372379	0.89[CHB][hapmap]
rs9384883	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs954620	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114066400-114071000	Weak transcription	HepG2	liver
2	chr6:114066800-114071000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:114067000-114075800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:114067400-114079200	Weak transcription	Placenta	Placenta
5	chr6:114067800-114070800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:114069400-114069800	Enhancers	Sigmoid Colon	Sigmoid Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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