Variant report
| Variant | rs9489200 |
|---|---|
| Chromosome Location | chr6:117779888-117779889 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:117779599..117781620-chr6:117784627..117786769,2 | K562 | blood: | |
| 2 | chr6:117778227..117782608-chr6:117922454..117926248,4 | MCF-7 | breast: | |
| 3 | chr6:117779054..117781463-chr6:117894101..117895608,2 | K562 | blood: | |
| 4 | chr6:117774730..117776749-chr6:117778089..117780267,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164465 | Chromatin interaction |
| ENSG00000047932 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10081022 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12182049 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs72961480 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72963407 | 0.89[ASN][1000 genomes] |
| rs72967491 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9481715 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9481727 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs9489143 | 0.89[ASN][1000 genomes] |
| rs9489211 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532050 | chr6:117528154-118203005 | ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | esv3386499 | chr6:117779859-117781657 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
