Variant report

Variant	rs9489363
Chromosome Location	chr6:118703201-118703202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10080340	1.00[EUR][1000 genomes]
rs10214801	1.00[EUR][1000 genomes]
rs11153727	0.89[AMR][1000 genomes]
rs11153749	1.00[EUR][1000 genomes]
rs11153751	1.00[EUR][1000 genomes]
rs12191962	0.86[EUR][1000 genomes]
rs12198458	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12199189	1.00[EUR][1000 genomes]
rs12199190	1.00[EUR][1000 genomes]
rs12199786	1.00[EUR][1000 genomes]
rs12202832	1.00[EUR][1000 genomes]
rs12202932	1.00[EUR][1000 genomes]
rs12203556	1.00[EUR][1000 genomes]
rs12207121	1.00[EUR][1000 genomes]
rs12212089	1.00[EUR][1000 genomes]
rs12215706	1.00[EUR][1000 genomes]
rs6900071	0.89[AMR][1000 genomes]
rs6903632	1.00[EUR][1000 genomes]
rs6904070	1.00[EUR][1000 genomes]
rs6934770	1.00[EUR][1000 genomes]
rs6939873	1.00[EUR][1000 genomes]
rs7743702	1.00[EUR][1000 genomes]
rs7755203	1.00[EUR][1000 genomes]
rs7759420	1.00[EUR][1000 genomes]
rs7774843	0.89[AMR][1000 genomes]
rs9387570	0.89[AMR][1000 genomes]
rs9387571	0.89[AMR][1000 genomes]
rs9387573	1.00[EUR][1000 genomes]
rs9387582	1.00[EUR][1000 genomes]
rs9398488	1.00[EUR][1000 genomes]
rs9401069	1.00[EUR][1000 genomes]
rs9481773	0.89[AMR][1000 genomes]
rs9481779	0.89[AMR][1000 genomes]
rs9481780	0.89[AMR][1000 genomes]
rs9481782	0.89[AMR][1000 genomes]
rs9481786	0.82[EUR][1000 genomes]
rs9481788	1.00[EUR][1000 genomes]
rs9481793	1.00[EUR][1000 genomes]
rs9481796	1.00[EUR][1000 genomes]
rs9481809	0.87[EUR][1000 genomes]
rs9481812	1.00[EUR][1000 genomes]
rs9481818	1.00[EUR][1000 genomes]
rs9489332	0.89[AMR][1000 genomes]
rs9489340	0.89[AMR][1000 genomes]
rs9489341	0.89[AMR][1000 genomes]
rs9489343	0.89[AMR][1000 genomes]
rs9489345	0.89[AMR][1000 genomes]
rs9489347	0.89[AMR][1000 genomes]
rs9489350	0.89[AMR][1000 genomes]
rs9489364	0.82[EUR][1000 genomes]
rs9489370	1.00[EUR][1000 genomes]
rs9489374	1.00[EUR][1000 genomes]
rs9489375	1.00[EUR][1000 genomes]
rs9489379	1.00[EUR][1000 genomes]
rs9489380	1.00[EUR][1000 genomes]
rs9489382	1.00[EUR][1000 genomes]
rs9489398	0.93[EUR][1000 genomes]
rs9489402	1.00[EUR][1000 genomes]
rs9489408	1.00[EUR][1000 genomes]
rs9489410	1.00[EUR][1000 genomes]
rs9489415	1.00[EUR][1000 genomes]
rs9489422	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv604555	chr6:118695049-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118699600-118707600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:118699600-118716400	Weak transcription	Psoas Muscle	Psoas
3	chr6:118700800-118708800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:118702400-118703400	Enhancers	Rectal Smooth Muscle	rectum

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